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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
738
ChIP-seq
350
total RNA-seq
229
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
48
WGBS
21
pCHi-C
20
DNase-seq
14
Hi-C
7
RRBS
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
2
Capture-C
2
HiChIP
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
FAIRE-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
738
DNA binding
541
Transcription
306
DNA accessibility
56
DNA methylation
14
3D chromatin structure
1
DNA sequencing
Target of assay
362
transcription factor
265
histone
265
histone modification
136
broad histone mark
129
narrow histone mark
109
control
82
recombinant protein
73
RNA binding protein
31
chromatin remodeller
2
other context
2
other post-translational modification
Date released
324
November, 2017
227
May, 2021
148
May, 2020
144
February, 2021
134
May, 2022
94
February, 2023
73
September, 2018
62
November, 2018
59
August, 2017
59
September, 2020
48
July, 2018
46
August, 2021
43
April, 2018
42
June, 2019
38
October, 2019
28
December, 2018
24
July, 2019
23
January, 2019
16
November, 2019
10
March, 2020
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
September, 2017
4
October, 2022
3
August, 2018
3
June, 2018
3
March, 2023
2
October, 2018
1
January, 2018
Available data
1145
bam
1095
bigWig
836
fastq
669
bed narrowPeak
447
bigBed narrowPeak
377
tsv
153
zippedFastqFolder
120
tagAlign
98
bed broadPeak
98
bigBed broadPeak
30
bed bed3+
8
bed bedMethyl
8
bigBed bedMethyl
8
hic
6
bedpe bed3+
5
hdf5
4
tar
3
cool
2
bed bed3
2
csv
1
txt
1
vcf
Organism
1685
Homo sapiens
Biosample type
2474
tissue
1052
primary cell
637
cell line
394
in vitro differentiated cells
10
stem cell
Organ
479
epithelium
432
pancreas
415
liver
103
vasculature
97
blood vessel
79
heart
69
blood
69
bodily fluid
68
artery
kidney
39
connective tissue
22
vein
21
brain
14
musculature of body
8
embryo
5
eye
2
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
1149
AMP
324
HPAP
213
T1D
2
community
1
ITG
Genome assembly (visualization)
1121
hg19
960
GRCh38
Lab
1086
AMP-T2D consortium
324
Klaus Kaestner, Upenn
244
Kyle Gaulton, UCSD
32
Bing Ren, UCSD
2
Anna Gloyn, Oxford
1
ITG
Audit category:
117
inconsistent ontology term
31
audit script error
1
inconsistent control
1
inconsistent replicate
Audit category:
57
missing controlled_by
Audit category:
31
inconsistent control read length
9
inconsistent control run_type
3
inconsistent assembly
organ_slims!
kidney
assay_title!
MeRIP-seq
BIOSAMPLE
ASSAY
1689 results
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table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
DNase-seq
Hi-C
RRBS
CRISPR genome editing followed by DNA sequencing
STARR-seq
Capture-C
HiChIP
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
DNAme array
FAIRE-seq
MPRA
shRNA RNA-seq
...and 2 more
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
+ See 86 more…
cell line
HepG2
378
14
1
1
2
2
2
EndoC_BH1
15
33
19
1
3
2
2
1
smooth muscle cell of the coronary artery
6
52
8
GM12878
60
1
Panc1
13
1
1
+ See 8 more…
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