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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
465
total RNA-seq
86
ChIP-seq
8
ATAC-seq
8
DNase-seq
WGBS
4
pCHi-C
4
single cell RNA-seq
3
small RNA-seq
1
Hi-C
1
RNA microarray
1
RRBS
Assay category
472
Transcription
86
DNA binding
16
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
41
histone
41
histone modification
27
control
24
broad histone mark
18
transcription factor
17
narrow histone mark
6
RNA binding protein
Date released
447
February, 2021
51
August, 2017
23
October, 2018
18
July, 2019
18
June, 2019
6
November, 2020
2
April, 2018
2
February, 2020
2
July, 2018
2
March, 2020
2
October, 2019
1
August, 2021
1
February, 2023
1
January, 2018
1
May, 2021
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
532
bam
511
bigWig
473
tsv
43
fastq
30
bed narrowPeak
25
bigBed narrowPeak
14
bed bed3+
9
bed broadPeak
8
bigBed broadPeak
8
tagAlign
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
580
Homo sapiens
Biosample type
541
tissue
in vitro differentiated cells
39
primary cell
1
stem cell
Organ
892
pancreas
771
liver
581
connective tissue
484
adipose tissue
453
epithelium
384
heart
kidney
286
brain
234
vasculature
228
blood vessel
159
bone element
141
artery
121
limb
95
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
embryo
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
580
AMP
1
T1D
Genome assembly (visualization)
516
hg19
510
GRCh38
Lab
580
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
15
inconsistent ontology term
Audit category:
12
missing controlled_by
organ_slims!
kidney
assay_title!
WGBS
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
581 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
pCHi-C
single cell RNA-seq
small RNA-seq
Hi-C
RNA microarray
RRBS
tissue
adipose tissue
382
2
3
1
bone tissue
58
subcutaneous abdominal adipose tissue
36
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
2
1
+ See 4 more…
primary cell
cardiac fibroblast
5
3
1
osteoblast
5
2
1
1
mesenchymal stem cell
7
pancreatic stellate cell
4
brain pericyte
1
1
+ See 7 more…
stem cell
mesenchymal stem cell
1
See all biosamples
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