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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
256
ChIP-seq
241
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
WGBS
19
DNase-seq
17
pCHi-C
10
Hi-C
7
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
430
Transcription
276
DNA accessibility
256
DNA binding
10
3D chromatin structure
8
DNA methylation
Target of assay
227
histone
227
histone modification
117
broad histone mark
110
narrow histone mark
32
control
RNA binding protein
8
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
93
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
57
August, 2017
48
July, 2018
43
April, 2018
42
February, 2021
39
June, 2019
24
July, 2019
23
October, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
577
bigWig
570
bam
398
fastq
265
bed narrowPeak
258
tsv
112
zippedFastqFolder
100
tagAlign
85
bigBed narrowPeak
34
bed broadPeak
34
bigBed broadPeak
27
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
997
Homo sapiens
Biosample type
2424
tissue
997
primary cell
577
cell line
383
in vitro differentiated cells
10
stem cell
Organ
354
epithelium
299
pancreas
38
connective tissue
35
vasculature
kidney
30
blood vessel
22
vein
18
brain
14
liver
14
musculature of body
12
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
515
AMP
277
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
595
hg19
501
GRCh38
Lab
480
AMP-T2D consortium
277
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
45
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
kidney
assay_title!
WGBS
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
997 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
Langerhans cell
85
48
pancreatic alpha cell
13
52
35
12
1
pancreatic beta cell
13
21
23
12
1
CD8-positive, alpha-beta T cell
33
4
2
1
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