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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
ChIP-seq
total RNA-seq
46
ATAC-seq
8
DNase-seq
6
single cell RNA-seq
5
Hi-C
2
WGBS
1
FAIRE-seq
pCHi-C
Assay category
99
DNA binding
55
DNA accessibility
6
Transcription
5
3D chromatin structure
2
DNA methylation
Target of assay
70
histone
70
histone modification
45
broad histone mark
25
narrow histone mark
21
control
8
transcription factor
4
RNA binding protein
Date released
50
May, 2019
47
October, 2019
35
February, 2023
14
February, 2021
6
August, 2021
6
July, 2019
4
June, 2019
3
November, 2017
2
March, 2020
Available data
128
bed narrowPeak
121
bam
91
bigWig
78
bigBed narrowPeak
12
bed broadPeak
12
bigBed broadPeak
10
bed bed3+
6
tagAlign
6
tsv
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
167
Homo sapiens
Biosample type
125
tissue
28
primary cell
14
cell line
Organ
599
liver
548
pancreas
393
epithelium
318
heart
kidney
267
brain
205
connective tissue
174
vasculature
168
blood vessel
115
limb
96
bone element
91
adipose tissue
89
musculature of body
85
artery
69
blood
69
bodily fluid
38
eye
38
nerve
24
spleen
23
embryo
22
vein
19
lung
18
ureter
12
skeleton
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
Project
167
AMP
Genome assembly (visualization)
128
GRCh38
101
hg19
Lab
167
AMP-T2D consortium
Audit category:
1
audit script error
organ_slims!
kidney
assay_title!
total RNA-seq
pCHi-C
BIOSAMPLE
ASSAY
167 results
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ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
WGBS
FAIRE-seq
tissue
coronary artery
5
36
2
tibial artery
23
1
2
aorta
13
4
1
2
ascending aorta
16
1
thoracic aorta
16
1
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primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
1
endothelial cell of hepatic sinusoid
1
cell line
smooth muscle cell of the coronary artery
6
8
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