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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1779
ChIP-seq
1473
total RNA-seq
456
ATAC-seq
299
single cell RNA-seq
131
DNase-seq
85
RNA microarray
78
snATAC-seq
75
WGBS
55
pCHi-C
33
Hi-C
17
RRBS
17
small RNA-seq
10
MeRIP-seq
5
GRO-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
131
DNA accessibility
17
DNA methylation
Date released
109
June, 2019
11
August, 2017
11
July, 2019
9
November, 2018
7
October, 2019
1
November, 2020
Available data
130
bam
130
bed narrowPeak
130
bigBed narrowPeak
130
bigWig
128
bed broadPeak
128
bigBed broadPeak
126
bed bed3+
16
fastq
15
bed bedMethyl
15
bigBed bedMethyl
Organism
148
Homo sapiens
Biosample type
120
tissue
26
primary cell
1
cell line
1
in vitro differentiated cells
Organ
kidney
38
musculature of body
36
limb
34
brain
32
heart
25
epithelium
18
ureter
12
vasculature
10
connective tissue
10
pancreas
9
blood vessel
8
liver
5
eye
4
artery
2
adipose tissue
2
nerve
2
vein
1
pericardium
1
spleen
Project
148
AMP
Genome assembly (visualization)
129
hg19
128
GRCh38
Lab
148
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
organ_slims!
kidney
BIOSAMPLE
ASSAY
148 results
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DNase-seq
RRBS
tissue
heart
18
muscle of arm
17
brain
14
1
muscle of leg
13
body of pancreas
4
+ See 33 more…
primary cell
cardiac fibroblast
3
1
skeletal muscle myoblast
2
1
cardiac muscle cell
1
1
choroid plexus epithelial cell
1
1
endothelial cell of umbilical vein
2
+ See 10 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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