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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1776
ChIP-seq
1346
total RNA-seq
414
ATAC-seq
290
single cell RNA-seq
128
DNase-seq
78
snATAC-seq
75
WGBS
48
pCHi-C
28
Hi-C
17
small RNA-seq
16
RRBS
5
GRO-seq
4
FAIRE-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
2
STARR-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
RNA microarray
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
128
DNA accessibility
Date released
106
June, 2019
9
November, 2018
7
October, 2019
5
August, 2017
1
November, 2020
Available data
127
bam
127
bed narrowPeak
127
bigBed narrowPeak
127
bigWig
125
bed broadPeak
125
bigBed broadPeak
123
bed bed3+
12
fastq
Organism
128
Homo sapiens
Biosample type
109
tissue
17
primary cell
1
cell line
1
in vitro differentiated cells
Organ
kidney
35
limb
32
brain
32
musculature of body
29
heart
18
epithelium
18
ureter
10
vasculature
9
blood vessel
8
connective tissue
8
pancreas
6
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
128
AMP
Genome assembly (visualization)
125
GRCh38
111
hg19
Lab
128
AMP-T2D consortium
Audit category:
inconsistent ontology term
organ_slims!
kidney
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
128 results
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DNase-seq
tissue
heart
18
muscle of arm
17
brain
14
muscle of leg
12
body of pancreas
4
+ See 31 more…
primary cell
cardiac fibroblast
2
endothelial cell of umbilical vein
2
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
+ See 9 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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