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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1467
total RNA-seq
1042
ChIP-seq
429
ATAC-seq
305
single cell RNA-seq
85
RNA microarray
78
snATAC-seq
75
WGBS
55
pCHi-C
33
Hi-C
17
RRBS
17
small RNA-seq
10
MeRIP-seq
5
GRO-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
DNase-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
17
Transcription
1
DNA accessibility
Date released
17
July, 2019
1
August, 2017
Available data
147
bam
147
bigWig
130
bed narrowPeak
bigBed narrowPeak
128
bed broadPeak
128
bigBed broadPeak
126
bed bed3+
17
tsv
12
fastq
Organism
18
Homo sapiens
Biosample type
16
tissue
2
primary cell
Organ
4
brain
4
liver
3
adipose tissue
3
connective tissue
kidney
2
epithelium
2
musculature of body
2
pancreas
1
heart
Project
18
AMP
Genome assembly (visualization)
17
GRCh38
17
hg19
Lab
18
AMP-T2D consortium
organ_slims!
kidney
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
18 results
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small RNA-seq
DNase-seq
tissue
right lobe of liver
2
1
body of pancreas
2
cerebellum (Hemisphere)
1
diencephalon
1
frontal cortex
1
+ See 8 more…
primary cell
mesenchymal stem cell of adipose
1
skeletal muscle satellite cell
1
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