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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1749
ChIP-seq
1473
total RNA-seq
456
ATAC-seq
298
single cell RNA-seq
122
DNase-seq
85
RNA microarray
78
snATAC-seq
68
WGBS
55
pCHi-C
33
Hi-C
17
RRBS
17
small RNA-seq
10
MeRIP-seq
5
GRO-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
STARR-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
122
DNA accessibility
Date released
109
June, 2019
November, 2018
7
October, 2019
5
August, 2017
1
November, 2020
Available data
121
bam
121
bed narrowPeak
121
bigBed narrowPeak
121
bigWig
119
bed broadPeak
119
bigBed broadPeak
117
bed bed3+
3
fastq
Organism
122
Homo sapiens
Biosample type
101
tissue
19
primary cell
1
cell line
1
in vitro differentiated cells
Organ
kidney
36
limb
33
musculature of body
30
brain
30
heart
19
epithelium
18
ureter
11
vasculature
9
blood vessel
8
connective tissue
6
pancreas
4
artery
4
eye
3
liver
2
nerve
2
vein
1
adipose tissue
Project
122
AMP
Genome assembly (visualization)
119
GRCh38
105
hg19
Lab
122
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
organ_slims!
kidney
month_released!
November, 2018
BIOSAMPLE
ASSAY
122 results
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DNase-seq
tissue
heart
18
muscle of arm
17
muscle of leg
13
brain
12
heart left ventricle
3
+ See 29 more…
primary cell
cardiac fibroblast
3
endothelial cell of umbilical vein
2
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
+ See 10 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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