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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1720
ChIP-seq
1412
total RNA-seq
410
ATAC-seq
293
single cell RNA-seq
123
DNase-seq
85
RNA microarray
78
snATAC-seq
73
WGBS
54
pCHi-C
28
Hi-C
17
RRBS
17
small RNA-seq
10
MeRIP-seq
5
GRO-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
STARR-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
123
DNA accessibility
Date released
105
June, 2019
9
November, 2018
5
August, 2017
3
October, 2019
1
November, 2020
Available data
122
bam
122
bed narrowPeak
122
bigBed narrowPeak
122
bigWig
120
bed broadPeak
120
bigBed broadPeak
118
bed bed3+
12
fastq
Organism
123
Homo sapiens
Biosample type
105
tissue
16
primary cell
1
cell line
1
in vitro differentiated cells
Organ
kidney
36
limb
33
musculature of body
32
brain
30
heart
19
epithelium
18
ureter
11
vasculature
blood vessel
9
connective tissue
8
pancreas
6
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
123
AMP
Genome assembly (visualization)
120
GRCh38
106
hg19
Lab
123
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
organ_slims!
kidney
blood vessel
BIOSAMPLE
ASSAY
123 results
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DNase-seq
tissue
heart
18
muscle of arm
17
brain
14
muscle of leg
13
body of pancreas
4
+ See 28 more…
primary cell
cardiac fibroblast
3
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain pericyte
1
+ See 8 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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