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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1705
ChIP-seq
1349
total RNA-seq
353
ATAC-seq
229
single cell RNA-seq
125
DNase-seq
85
RNA microarray
78
snATAC-seq
55
pCHi-C
28
WGBS
25
Hi-C
17
small RNA-seq
14
RRBS
5
GRO-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
STARR-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
125
DNA accessibility
Date released
105
June, 2019
9
November, 2018
5
August, 2017
5
October, 2019
1
November, 2020
Available data
124
bam
124
bed narrowPeak
124
bigBed narrowPeak
124
bigWig
122
bed broadPeak
122
bigBed broadPeak
120
bed bed3+
12
fastq
Organism
125
Homo sapiens
Biosample type
110
tissue
13
primary cell
1
cell line
1
in vitro differentiated cells
Organ
kidney
36
limb
33
musculature of body
32
brain
30
heart
epithelium
18
ureter
11
vasculature
9
blood vessel
9
connective tissue
8
pancreas
6
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
125
AMP
Genome assembly (visualization)
122
GRCh38
108
hg19
Lab
125
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
organ_slims!
kidney
epithelium
BIOSAMPLE
ASSAY
125 results
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DNase-seq
tissue
heart
18
muscle of arm
17
brain
14
muscle of leg
13
body of pancreas
4
+ See 31 more…
primary cell
cardiac fibroblast
3
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain pericyte
1
+ See 5 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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