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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1284
total RNA-seq
1267
ChIP-seq
433
ATAC-seq
298
single cell RNA-seq
125
DNase-seq
85
RNA microarray
78
snATAC-seq
70
WGBS
52
pCHi-C
29
Hi-C
15
RRBS
14
small RNA-seq
10
MeRIP-seq
5
GRO-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
STARR-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
125
DNA accessibility
Date released
107
June, 2019
7
October, 2019
6
November, 2018
4
August, 2017
1
November, 2020
Available data
125
bam
125
bed narrowPeak
125
bigBed narrowPeak
125
bigWig
123
bed broadPeak
123
bigBed broadPeak
121
bed bed3+
9
fastq
Organism
125
Homo sapiens
Biosample type
106
tissue
17
primary cell
1
cell line
1
in vitro differentiated cells
Organ
kidney
36
limb
33
musculature of body
32
brain
30
heart
19
epithelium
18
ureter
11
vasculature
9
blood vessel
9
connective tissue
8
pancreas
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
125
AMP
Genome assembly (visualization)
123
GRCh38
109
hg19
Lab
125
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
organ_slims!
kidney
liver
BIOSAMPLE
ASSAY
125 results
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Clear Filters
DNase-seq
tissue
heart
18
muscle of arm
17
brain
14
muscle of leg
13
body of pancreas
4
+ See 29 more…
primary cell
cardiac fibroblast
3
endothelial cell of umbilical vein
2
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
+ See 8 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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