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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
310
ChIP-seq
110
single cell RNA-seq
102
ATAC-seq
86
total RNA-seq
85
RNA microarray
25
pCHi-C
22
snATAC-seq
15
Hi-C
11
WGBS
10
RRBS
4
MeRIP-seq
3
FAIRE-seq
1
DNase-seq
Assay category
310
DNA binding
196
Transcription
128
DNA accessibility
21
DNA methylation
15
3D chromatin structure
Target of assay
178
control
134
histone
134
histone modification
73
narrow histone mark
61
broad histone mark
2
nucleotide modification
Date released
126
August, 2017
101
August, 2021
85
February, 2021
79
October, 2019
66
May, 2022
60
February, 2023
31
March, 2020
31
May, 2020
29
October, 2018
25
February, 2020
25
November, 2017
23
May, 2019
19
April, 2020
14
July, 2019
12
December, 2017
11
April, 2019
9
October, 2017
8
January, 2021
4
December, 2018
4
July, 2018
4
November, 2018
4
November, 2020
4
September, 2017
3
March, 2019
2
January, 2018
2
May, 2021
1
August, 2022
1
January, 2019
1
November, 2019
Available data
196
bam
149
tsv
122
tagAlign
100
bed narrowPeak
97
fastq
95
txt
59
bigWig
22
bed broadPeak
10
bedpe bed3+
10
hic
8
bed bedMethyl
8
bigBed bedMethyl
5
bed bed3
5
bigBed narrowPeak
1
bed bed3+
1
bedpe
1
csv
Organism
781
Homo sapiens
Biosample type
784
tissue
544
primary cell
191
cell line
129
in vitro differentiated cells
7
stem cell
Organ
kidney
123
liver
122
heart
119
pancreas
92
bone element
67
connective tissue
66
adipose tissue
62
brain
53
eye
40
musculature of body
28
blood vessel
28
vasculature
26
limb
20
lung
15
epithelium
12
nerve
11
artery
9
spleen
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
736
AMP
29
T1D
19
LungMap
Genome assembly (visualization)
1663
hg19
GRCh38
Lab
664
AMP-T2D consortium
52
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
organ_slims!
kidney
assembly!
GRCh38
BIOSAMPLE
ASSAY
784 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
RNA microarray
pCHi-C
snATAC-seq
Hi-C
WGBS
RRBS
MeRIP-seq
FAIRE-seq
DNase-seq
tissue
islet of Langerhans
46
46
32
4
7
3
1
4
1
liver
70
1
20
20
1
1
3
1
bone element
84
subcutaneous abdominal adipose tissue
36
3
heart left ventricle
7
18
1
1
2
1
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