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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
RRBS
Assay category
15
DNA methylation
Date released
11
July, 2019
4
August, 2017
Available data
bam
1687
bigWig
1576
tsv
501
fastq
348
bed narrowPeak
161
bigBed narrowPeak
153
zippedFastqFolder
142
bed bed3+
130
bed broadPeak
128
bigBed broadPeak
99
txt
32
bed bedMethyl
32
bigBed bedMethyl
23
bedpe bed3+
22
hic
12
bed bed3
7
bed bedgraph
5
hdf5
3
cool
3
csv
2
ibed
1
bedpe
1
tar
1
vcf
Organism
15
Homo sapiens
Biosample type
8
tissue
7
primary cell
Organ
6
epithelium
kidney
3
musculature of body
2
brain
2
heart
2
liver
2
pancreas
1
connective tissue
1
eye
1
pericardium
1
vasculature
Project
15
AMP
Genome assembly (visualization)
15
hg19
Lab
15
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
kidney
audit.ERROR.category!
inconsistent control
assay_slims!
DNA binding
files.file_type!
bam
BIOSAMPLE
ASSAY
15 results
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RRBS
tissue
skeletal muscle tissue
2
brain
1
heart left ventricle
1
islet of Langerhans
1
liver
1
+ See 2 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
hepatocyte
1
retinal pigment epithelial cell
1
+ See 2 more…
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