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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
single cell RNA-seq
43
ChIP-seq
25
total RNA-seq
12
ATAC-seq
4
Capture-C
3
STARR-seq
2
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
43
DNA binding
25
Transcription
12
DNA accessibility
2
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
694
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
284
October, 2019
204
February, 2023
166
May, 2022
137
June, 2019
120
July, 2018
115
May, 2019
94
July, 2019
91
August, 2021
87
November, 2018
76
October, 2018
72
September, 2018
67
December, 2017
62
March, 2020
61
November, 2019
57
April, 2019
40
May, 2024
39
February, 2018
34
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
September, 2020
16
January, 2021
16
November, 2020
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
6
April, 2018
5
December, 2019
5
March, 2019
5
March, 2023
4
October, 2022
1
August, 2018
1
August, 2022
1
May, 2023
Available data
49
bam
47
bigWig
42
bed narrowPeak
25
tsv
24
tagAlign
5
bed bed3+
2
bedpe bed3+
1
hic
1
vcf
Organism
90
Homo sapiens
Biosample type
42
cell line
42
in vitro differentiated cells
4
primary cell
3
tissue
Organ
kidney
35
liver
8
embryo
6
epithelium
5
connective tissue
4
pancreas
1
adipose tissue
Project
91
AMP
Genome assembly (visualization)
59
hg19
41
GRCh38
Lab
53
AMP-T2D consortium
34
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
organ_slims!
kidney
audit.ERROR.category!
inconsistent control
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
91 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
Capture-C
STARR-seq
Hi-C
RNA microarray
whole genome sequencing assay
cell line
HepG2
18
9
2
1
1
H1-hESC
8
EndoC_BH1
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
21
7
10
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
4
tissue
islet of Langerhans
1
1
subcutaneous adipose tissue
1
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