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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1791
ChIP-seq
1473
total RNA-seq
456
ATAC-seq
299
single cell RNA-seq
131
DNase-seq
85
RNA microarray
78
snATAC-seq
75
WGBS
55
pCHi-C
33
Hi-C
17
RRBS
17
small RNA-seq
10
MeRIP-seq
5
GRO-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Date released
84
February, 2021
5
August, 2021
Available data
84
txt
2
bed bed3+
Organism
88
Homo sapiens
Biosample type
85
tissue
2
cell line
2
in vitro differentiated cells
Organ
84
bone element
3
connective tissue
3
epithelium
kidney
2
pancreas
1
adipose tissue
Project
89
AMP
Genome assembly (visualization)
2
hg19
Lab
87
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
86
inconsistent ontology term
organ_slims!
kidney
audit.ERROR.category!
inconsistent control
BIOSAMPLE
ASSAY
89 results
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RNA microarray
Capture-C
tissue
bone element
84
subcutaneous adipose tissue
1
cell line
EndoC_BH1
2
in vitro differentiated cells
adipocyte
1
osteoblast
1
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