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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1573
ChIP-seq
1070
total RNA-seq
304
ATAC-seq
225
single cell RNA-seq
123
DNase-seq
85
RNA microarray
67
snATAC-seq
54
pCHi-C
24
Hi-C
24
WGBS
15
RRBS
15
small RNA-seq
5
GRO-seq
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
2
Capture-C
2
FAIRE-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
123
DNA accessibility
Date released
105
June, 2019
7
November, 2018
6
October, 2019
4
August, 2017
1
November, 2020
Available data
122
bam
122
bed narrowPeak
122
bigBed narrowPeak
122
bigWig
121
bed broadPeak
121
bigBed broadPeak
119
bed bed3+
9
fastq
Organism
123
Homo sapiens
Biosample type
103
tissue
19
primary cell
1
in vitro differentiated cells
Organ
kidney
36
limb
33
musculature of body
32
brain
30
heart
19
epithelium
18
ureter
11
vasculature
9
blood vessel
9
connective tissue
pancreas
6
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
123
AMP
Genome assembly (visualization)
120
GRCh38
108
hg19
Lab
123
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
organ_slims!
kidney
pancreas
audit.ERROR.category!
inconsistent control
BIOSAMPLE
ASSAY
123 results
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DNase-seq
tissue
heart
18
muscle of arm
17
brain
14
muscle of leg
13
heart left ventricle
3
+ See 28 more…
primary cell
cardiac fibroblast
3
endothelial cell of umbilical vein
2
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
+ See 10 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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