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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
ChIP-seq
13
ATAC-seq
8
snATAC-seq
4
total RNA-seq
Assay category
59
DNA binding
21
DNA accessibility
4
Transcription
Target of assay
50
transcription factor
10
RNA binding protein
9
chromatin remodeller
6
control
1
histone
1
histone modification
1
narrow histone mark
Date released
26
December, 2018
18
January, 2019
15
November, 2018
8
February, 2021
8
February, 2023
8
January, 2021
1
January, 2018
Available data
67
bam
61
bed narrowPeak
59
fastq
54
bigWig
53
bigBed narrowPeak
4
bed bed3
4
txt
Organism
84
Homo sapiens
Biosample type
60
cell line
16
tissue
8
primary cell
Organ
946
pancreas
764
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
68
blood
68
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
76
AMP
8
T1D
Genome assembly (visualization)
66
hg19
61
GRCh38
Lab
76
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
inconsistent control
organ_slims!
kidney
audit.ERROR.category!
inconsistent control
BIOSAMPLE
ASSAY
84 results
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ChIP-seq
ATAC-seq
snATAC-seq
total RNA-seq
cell line
GM12878
59
1
tissue
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
pubis
1
1
distal epiphysis
1
+ See 7 more…
primary cell
peripheral blood mononuclear cell
8
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