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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
single cell RNA-seq
92
total RNA-seq
58
snATAC-seq
49
ATAC-seq
47
WGBS
Hi-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
190
Transcription
107
DNA accessibility
47
DNA methylation
Date released
134
May, 2022
76
February, 2023
59
September, 2020
45
February, 2021
19
April, 2020
7
August, 2020
4
March, 2023
Available data
169
fastq
153
zippedFastqFolder
10
bigWig
6
tsv
Organism
339
Homo sapiens
Biosample type
321
primary cell
19
tissue
2
cell line
2
stem cell
Organ
149
epithelium
149
pancreas
kidney
19
lung
Project
AMP
321
HPAP
T1D
19
LungMap
4
community
Genome assembly (visualization)
10
GRCh38
Lab
321
Klaus Kaestner, Upenn
19
Xin Sun, UCSD
4
Anna Gloyn, Oxford
Audit category:
27
audit script error
organ_slims!
kidney
award.project!
AMP
T1D
assay_title!
Hi-C
BIOSAMPLE
ASSAY
344 results
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single cell RNA-seq
total RNA-seq
snATAC-seq
ATAC-seq
WGBS
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
31
pancreatic beta cell
11
16
16
exocrine cell
39
pancreatic acinar cell
4
tissue
lung
9
10
cell line
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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