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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
96
ChIP-seq
95
total RNA-seq
28
ATAC-seq
6
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
Hi-C
2
HiChIP
2
pCHi-C
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
1
MPRA
1
STARR-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
97
Transcription
96
DNA binding
29
DNA accessibility
2
3D chromatin structure
Target of assay
57
transcription factor
20
control
20
histone
20
histone modification
11
RNA binding protein
10
broad histone mark
10
chromatin remodeller
10
narrow histone mark
3
nucleotide modification
Date released
94
February, 2021
27
December, 2018
21
May, 2021
18
January, 2019
16
November, 2019
15
November, 2018
15
October, 2019
11
August, 2021
9
March, 2020
6
February, 2023
6
November, 2020
2
March, 2023
1
January, 2018
1
October, 2022
Available data
201
bam
178
bigWig
98
tsv
88
bed narrowPeak
61
bigBed narrowPeak
60
fastq
8
tagAlign
2
bed bed3+
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
1
hdf5
1
hic
1
txt
Organism
238
Homo sapiens
Biosample type
2077
tissue
1038
primary cell
379
in vitro differentiated cells
242
cell line
10
stem cell
Organ
liver
92
pancreas
79
epithelium
66
artery
66
blood vessel
66
heart
66
vasculature
61
blood
61
bodily fluid
kidney
8
embryo
1
mammary gland
Project
231
AMP
9
T1D
2
community
Genome assembly (visualization)
188
hg19
184
GRCh38
Lab
228
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
1
Bing Ren, UCSD
Audit category:
77
inconsistent ontology term
1
inconsistent control
Audit category:
1
inconsistent assembly
organ_slims!
kidney
liver
BIOSAMPLE
ASSAY
242 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
MeRIP-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
Hi-C
HiChIP
pCHi-C
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
MPRA
STARR-seq
shRNA RNA-seq
siRNA RNA-seq
cell line
EndoC_BH1
15
33
19
6
3
2
1
2
1
smooth muscle cell of the coronary artery
6
52
8
GM12878
60
1
Panc1
13
1
1
H1-hESC
8
EndoC-BH1
1
1
early embryonic cell
2
iPSC derived cell line
2
MCF-7
1
MIN6
1
Synthesized DNA
1
fibroblast cell line
1
See all biosamples
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