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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
264
ChIP-seq
241
total RNA-seq
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
19
DNase-seq
17
pCHi-C
10
Hi-C
7
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
430
Transcription
264
DNA binding
76
DNA accessibility
55
DNA methylation
10
3D chromatin structure
Target of assay
227
histone
227
histone modification
117
broad histone mark
110
narrow histone mark
32
control
8
RNA binding protein
8
transcription factor
1
chromatin remodeller
Date released
193
May, 2021
95
May, 2022
76
February, 2023
59
September, 2018
56
August, 2017
56
September, 2020
48
July, 2018
47
February, 2021
47
May, 2020
43
April, 2018
42
June, 2019
24
July, 2019
21
October, 2019
9
November, 2017
8
January, 2021
5
December, 2019
5
November, 2020
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
507
bigWig
494
bam
377
fastq
252
tsv
234
bed narrowPeak
114
zippedFastqFolder
100
tagAlign
71
bigBed narrowPeak
39
bed broadPeak
39
bigBed broadPeak
27
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
tar
Organism
852
Homo sapiens
Biosample type
2253
tissue
852
primary cell
614
cell line
352
in vitro differentiated cells
10
stem cell
Organ
334
epithelium
275
pancreas
37
connective tissue
37
vasculature
kidney
31
blood vessel
22
vein
21
brain
14
musculature of body
13
heart
13
liver
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
372
AMP
275
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
519
hg19
459
GRCh38
Lab
337
AMP-T2D consortium
275
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
34
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
kidney
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
852 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
1
1
Langerhans cell
85
48
pancreatic alpha cell
13
52
12
31
1
pancreatic beta cell
13
21
12
16
1
exocrine cell
39
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