Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ATAC-seq
97
total RNA-seq
87
single cell RNA-seq
69
ChIP-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
9
Hi-C
7
RRBS
2
DNase-seq
1
DNAme array
1
FAIRE-seq
Assay category
210
DNA accessibility
184
Transcription
69
DNA binding
55
DNA methylation
9
3D chromatin structure
Target of assay
39
histone
39
histone modification
29
control
26
broad histone mark
13
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
134
May, 2022
102
May, 2020
88
February, 2023
57
May, 2021
56
September, 2020
46
February, 2021
17
August, 2017
10
July, 2019
9
October, 2019
8
January, 2021
7
June, 2019
3
November, 2017
3
October, 2022
1
August, 2021
1
March, 2020
1
November, 2018
1
September, 2018
Available data
180
fastq
153
zippedFastqFolder
94
bigWig
81
bam
34
bed narrowPeak
18
tsv
7
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
5
hic
4
bed broadPeak
4
bedpe bed3+
4
bigBed broadPeak
4
bigBed narrowPeak
4
hdf5
3
cool
2
csv
2
tagAlign
1
tar
Organism
544
Homo sapiens
Biosample type
784
tissue
544
primary cell
191
cell line
129
in vitro differentiated cells
7
stem cell
Organ
181
epithelium
154
pancreas
15
vasculature
13
blood vessel
10
vein
8
blood
8
bodily fluid
kidney
7
brain
7
connective tissue
3
heart
3
liver
3
musculature of body
2
eye
1
bone element
1
bone marrow
Project
314
HPAP
206
AMP
24
T1D
Genome assembly (visualization)
603
hg19
GRCh38
Lab
314
Klaus Kaestner, Upenn
171
AMP-T2D consortium
59
Kyle Gaulton, UCSD
Audit category:
31
audit script error
15
inconsistent ontology term
organ_slims!
kidney
assembly!
GRCh38
BIOSAMPLE
ASSAY
544 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
total RNA-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
22
42
6
31
1
pancreatic beta cell
13
11
6
16
1
exocrine cell
39
CD8-positive, alpha-beta T cell
2
2
33
1
+ See 57 more…
See all biosamples
Download