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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
180
ChIP-seq
151
ATAC-seq
102
single cell RNA-seq
53
total RNA-seq
19
DNase-seq
7
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
180
DNA binding
171
DNA accessibility
157
Transcription
8
DNA methylation
6
3D chromatin structure
Target of assay
143
histone
143
histone modification
73
broad histone mark
70
narrow histone mark
32
control
8
RNA binding protein
8
transcription factor
1
chromatin remodeller
Date released
102
May, 2020
73
September, 2018
59
August, 2017
55
May, 2021
48
July, 2018
43
April, 2018
42
June, 2019
24
July, 2019
23
October, 2019
12
February, 2023
9
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
February, 2021
3
June, 2018
2
October, 2018
1
March, 2020
1
November, 2018
Available data
398
bam
395
bigWig
240
fastq
189
bed narrowPeak
162
tsv
93
bigBed narrowPeak
39
bed broadPeak
39
bigBed broadPeak
27
bed bed3+
16
tagAlign
7
bed bedMethyl
7
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
523
Homo sapiens
Biosample type
2388
tissue
632
cell line
523
primary cell
394
in vitro differentiated cells
8
stem cell
Organ
254
epithelium
194
pancreas
38
connective tissue
37
vasculature
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
523
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
420
hg19
317
GRCh38
Lab
488
AMP-T2D consortium
35
Kyle Gaulton, UCSD
Audit category:
41
inconsistent ontology term
1
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
kidney
BIOSAMPLE
ASSAY
523 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
DNase-seq
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
pancreatic beta cell
13
7
12
10
pancreatic alpha cell
13
6
12
10
CD8-positive, alpha-beta T cell
33
2
2
pancreatic ductal cell
13
4
10
4
pancreatic acinar cell
8
5
12
4
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