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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
267
ChIP-seq
241
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
21
pCHi-C
19
DNase-seq
10
Hi-C
7
RRBS
2
small RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
FAIRE-seq
1
GRO-seq
Assay category
432
Transcription
276
DNA accessibility
267
DNA binding
55
DNA methylation
10
3D chromatin structure
Target of assay
229
histone
229
histone modification
118
broad histone mark
111
narrow histone mark
33
control
8
RNA binding protein
8
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
42
June, 2019
24
July, 2019
23
October, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
March, 2020
5
September, 2017
4
August, 2021
3
August, 2018
3
December, 2017
3
June, 2018
3
March, 2023
3
October, 2022
2
October, 2018
1
January, 2018
1
November, 2018
Available data
588
bigWig
581
bam
413
fastq
275
bed narrowPeak
268
tsv
153
zippedFastqFolder
100
tagAlign
93
bigBed narrowPeak
39
bed broadPeak
39
bigBed broadPeak
30
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
1060
Homo sapiens
Biosample type
2438
tissue
1052
primary cell
643
cell line
394
in vitro differentiated cells
10
stem cell
Organ
406
epithelium
346
pancreas
40
connective tissue
37
vasculature
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
531
AMP
324
HPAP
204
T1D
2
community
1
ITG
Genome assembly (visualization)
606
hg19
511
GRCh38
1
hg18
Lab
496
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
1
ITG
Audit category:
47
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
7
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
kidney
BIOSAMPLE
ASSAY
1062 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
DNase-seq
Hi-C
RRBS
small RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
DNAme array
FAIRE-seq
GRO-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
+ See 86 more…
stem cell
hESC
3
1
SB Ad3.1
1
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
+ See 1 more…
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