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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
264
ChIP-seq
232
total RNA-seq
200
ATAC-seq
184
single cell RNA-seq
56
snATAC-seq
47
WGBS
19
DNase-seq
17
pCHi-C
6
Hi-C
1
DNAme array
1
FAIRE-seq
1
RRBS
Assay category
416
Transcription
276
DNA accessibility
264
DNA binding
49
DNA methylation
6
3D chromatin structure
Target of assay
227
histone
227
histone modification
117
broad histone mark
110
narrow histone mark
29
control
8
RNA binding protein
8
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
42
June, 2019
July, 2019
23
October, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
567
bigWig
564
bam
409
fastq
273
bed narrowPeak
250
tsv
153
zippedFastqFolder
100
tagAlign
93
bigBed narrowPeak
39
bed broadPeak
39
bigBed broadPeak
23
bed bed3+
6
hic
4
bedpe bed3+
3
cool
2
csv
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
1028
Homo sapiens
Biosample type
2365
tissue
1028
primary cell
643
cell line
394
in vitro differentiated cells
10
stem cell
Organ
393
epithelium
346
pancreas
32
vasculature
31
connective tissue
kidney
27
blood vessel
22
vein
14
brain
12
liver
11
musculature of body
8
blood
8
bodily fluid
8
heart
4
eye
1
bone element
1
bone marrow
Project
499
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
579
hg19
494
GRCh38
Lab
464
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
45
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
kidney
month_released!
July, 2019
BIOSAMPLE
ASSAY
1028 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
DNAme array
FAIRE-seq
RRBS
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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