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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
194
ChIP-seq
160
total RNA-seq
129
ATAC-seq
113
single cell RNA-seq
56
snATAC-seq
19
DNase-seq
17
pCHi-C
7
Hi-C
7
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
275
Transcription
205
DNA accessibility
194
DNA binding
8
DNA methylation
7
3D chromatin structure
Target of assay
169
histone
169
histone modification
90
broad histone mark
79
narrow histone mark
20
control
8
RNA binding protein
8
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
54
May, 2022
51
February, 2023
42
February, 2021
42
June, 2019
40
September, 2020
24
July, 2019
23
October, 2019
18
August, 2017
11
July, 2018
10
April, 2018
9
November, 2017
8
January, 2021
6
November, 2020
5
December, 2019
4
August, 2021
2
June, 2018
1
March, 2020
1
March, 2023
1
November, 2018
1
September, 2018
Available data
393
bigWig
384
bam
205
bed narrowPeak
156
tsv
151
fastq
100
tagAlign
73
zippedFastqFolder
71
bigBed narrowPeak
39
bed broadPeak
39
bigBed broadPeak
27
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
4
hdf5
3
hic
2
csv
1
bed bed3
1
bedpe bed3+
1
tar
Organism
706
Homo sapiens
Biosample type
1933
tissue
706
primary cell
551
cell line
391
in vitro differentiated cells
10
stem cell
Organ
406
epithelium
pancreas
39
connective tissue
37
vasculature
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
329
AMP
204
T1D
172
HPAP
1
ITG
Genome assembly (visualization)
418
hg19
316
GRCh38
Lab
294
AMP-T2D consortium
239
Kyle Gaulton, UCSD
172
Klaus Kaestner, Upenn
1
ITG
Audit category:
41
inconsistent ontology term
28
audit script error
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
organ_slims!
kidney
pancreas
BIOSAMPLE
ASSAY
706 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
Langerhans cell
85
48
CD8-positive, alpha-beta T cell
33
4
2
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
22
1
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