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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
293
ChIP-seq
281
ATAC-seq
199
single cell RNA-seq
196
total RNA-seq
85
RNA microarray
78
snATAC-seq
57
WGBS
54
pCHi-C
33
Hi-C
17
RRBS
10
MeRIP-seq
5
GRO-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
DNase-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
199
Transcription
Date released
98
August, 2021
40
September, 2020
34
May, 2022
13
February, 2021
9
April, 2020
2
December, 2019
1
February, 2023
1
November, 2018
1
September, 2018
Available data
200
tsv
128
fastq
bam
100
bigWig
52
zippedFastqFolder
3
csv
Organism
199
Homo sapiens
Biosample type
110
tissue
87
primary cell
2
in vitro differentiated cells
Organ
93
heart
kidney
9
lung
6
blood vessel
6
vasculature
2
artery
1
liver
1
musculature of body
Project
105
AMP
85
HPAP
9
LungMap
Lab
105
AMP-T2D consortium
85
Klaus Kaestner, Upenn
9
Xin Sun, UCSD
Audit category:
2
audit script error
2
inconsistent ontology term
organ_slims!
kidney
files.file_type!
bam
BIOSAMPLE
ASSAY
199 results
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single cell RNA-seq
tissue
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
lung
9
+ See 12 more…
primary cell
Langerhans cell
85
pancreatic cell
2
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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