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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
170
ChIP-seq
168
ATAC-seq
121
total RNA-seq
59
single cell RNA-seq
41
WGBS
29
snATAC-seq
18
DNase-seq
17
pCHi-C
10
Hi-C
6
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
216
DNA accessibility
182
Transcription
170
DNA binding
48
DNA methylation
10
3D chromatin structure
Target of assay
154
histone
154
histone modification
84
broad histone mark
70
narrow histone mark
16
control
3
RNA binding protein
3
transcription factor
Date released
206
May, 2021
147
May, 2020
134
May, 2022
42
June, 2019
24
July, 2019
23
October, 2019
18
September, 2020
12
February, 2023
8
January, 2021
6
November, 2020
5
April, 2018
5
December, 2019
4
August, 2021
3
February, 2021
3
October, 2022
1
August, 2017
1
March, 2020
1
March, 2023
Available data
585
bigWig
578
bam
fastq
273
bed narrowPeak
264
tsv
153
zippedFastqFolder
100
tagAlign
93
bigBed narrowPeak
39
bed broadPeak
39
bigBed broadPeak
27
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
643
Homo sapiens
Biosample type
2061
tissue
643
primary cell
253
in vitro differentiated cells
216
cell line
6
stem cell
Organ
168
epithelium
88
pancreas
36
connective tissue
kidney
31
vasculature
28
blood vessel
22
vein
14
liver
14
musculature of body
13
heart
12
brain
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
283
AMP
204
T1D
155
HPAP
1
ITG
Genome assembly (visualization)
377
hg19
279
GRCh38
Lab
248
AMP-T2D consortium
239
Kyle Gaulton, UCSD
155
Klaus Kaestner, Upenn
1
ITG
Audit category:
39
inconsistent ontology term
4
audit script error
organ_slims!
kidney
files.file_type!
fastq
BIOSAMPLE
ASSAY
643 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
WGBS
snATAC-seq
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
15
54
1
1
Langerhans cell
51
21
pancreatic alpha cell
22
25
1
CD8-positive, alpha-beta T cell
33
2
4
1
pancreatic beta cell
13
16
1
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