Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
385
ChIP-seq
10
ATAC-seq
1
DNase-seq
Assay category
385
DNA binding
11
DNA accessibility
Target of assay
345
transcription factor
81
recombinant protein
63
RNA binding protein
35
histone
35
histone modification
30
chromatin remodeller
18
narrow histone mark
17
broad histone mark
2
other context
2
other post-translational modification
Date released
249
November, 2017
56
November, 2018
27
December, 2018
15
January, 2019
14
August, 2021
14
February, 2021
12
November, 2019
7
October, 2019
1
March, 2020
1
May, 2021
Available data
567
bam
510
bigWig
427
fastq
396
bed narrowPeak
354
bigBed narrowPeak
113
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
396
Homo sapiens
Biosample type
791
tissue
396
cell line
273
primary cell
132
in vitro differentiated cells
2
stem cell
Organ
308
liver
54
blood
54
bodily fluid
21
pancreas
15
epithelium
12
artery
12
blood vessel
12
heart
12
vasculature
kidney
Project
394
AMP
2
T1D
Genome assembly (visualization)
392
hg19
350
GRCh38
Lab
382
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
14
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
24
inconsistent control read length
8
inconsistent control run_type
organ_slims!
kidney
BIOSAMPLE
ASSAY
396 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
307
1
GM12878
54
EndoC_BH1
13
1
smooth muscle cell of the coronary artery
4
8
Panc1
6
1
+ See 1 more…
See all biosamples
Download