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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
304
ChIP-seq
Assay category
304
DNA binding
Target of assay
263
histone
263
histone modification
134
narrow histone mark
129
broad histone mark
37
control
4
transcription factor
Date released
90
May, 2021
66
November, 2017
65
August, 2017
49
October, 2019
20
August, 2021
14
October, 2017
Available data
2366
bam
2238
bigWig
1304
tsv
1105
bed narrowPeak
833
fastq
519
bigBed narrowPeak
304
tagAlign
180
bed bed3+
180
bed broadPeak
153
zippedFastqFolder
143
bigBed broadPeak
98
txt
29
bed bedMethyl
29
bigBed bedMethyl
20
bedpe bed3+
19
hic
11
bed bed3
7
bed bedgraph
3
cool
3
hdf5
2
csv
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
297
Homo sapiens
Biosample type
168
tissue
96
primary cell
40
in vitro differentiated cells
cell line
Organ
118
brain
liver
22
connective tissue
19
pancreas
15
musculature of body
8
adipose tissue
7
epithelium
1
pituitary gland
Project
220
AMP
84
T1D
Genome assembly (visualization)
210
GRCh38
191
hg19
Lab
220
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
2
inconsistent assembly
organ_slims!
kidney
liver
biosample_type!
cell line
BIOSAMPLE
ASSAY
304 results
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Clear Filters
ChIP-seq
tissue
substantia nigra
16
caudate nucleus
15
layer of hippocampus
15
skeletal muscle tissue
15
brain
14
+ See 42 more…
primary cell
monocyte
84
skeletal muscle myoblast
12
in vitro differentiated cells
neural progenitor cell
20
adipocyte
14
cardiomyocytes
3
pancreatic PP cell
3
See all biosamples
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