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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1625
ChIP-seq
1358
total RNA-seq
422
ATAC-seq
299
single cell RNA-seq
131
DNase-seq
85
RNA microarray
75
WGBS
60
snATAC-seq
38
pCHi-C
33
Hi-C
17
RRBS
17
small RNA-seq
10
MeRIP-seq
5
GRO-seq
4
Capture-C
4
FAIRE-seq
3
STARR-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
4
DNA accessibility
Date released
1
August, 2017
1
July, 2019
1
November, 2018
1
October, 2019
Available data
4
bam
4
bed narrowPeak
4
bigBed narrowPeak
4
bigWig
2
fastq
1
tar
Organism
4
Homo sapiens
Biosample type
3
tissue
1
primary cell
Organ
2
pancreas
1
blood vessel
1
brain
1
epithelium
kidney
1
vasculature
1
vein
Project
4
AMP
Genome assembly (visualization)
4
hg19
Lab
4
AMP-T2D consortium
organ_slims!
kidney
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
4 results
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FAIRE-seq
tissue
frontal cortex
1
islet of Langerhans
1
pancreas
1
primary cell
endothelial cell of umbilical vein
1
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