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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
4
total RNA-seq
3
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
4
DNA accessibility
4
Transcription
Date released
84
February, 2021
7
February, 2023
1
May, 2022
1
October, 2022
Available data
3044
bam
2778
bigWig
1480
tsv
1462
bed narrowPeak
1334
fastq
938
bigBed narrowPeak
314
tagAlign
244
bed broadPeak
207
bigBed broadPeak
193
bed bed3+
153
zippedFastqFolder
93
txt
32
bed bedMethyl
32
bigBed bedMethyl
23
bedpe bed3+
22
hic
12
bed bed3
7
bed bedgraph
5
hdf5
4
tar
3
cool
3
csv
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
92
Homo sapiens
Biosample type
89
tissue
3
in vitro differentiated cells
1
cell line
Organ
88
bone element
kidney
4
skeleton
1
musculature of body
Project
93
AMP
Genome assembly (visualization)
4
hg19
Lab
90
AMP-T2D consortium
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
1
audit script error
organ_slims!
kidney
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
93 results
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RNA microarray
total RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
bone element
84
acetabular part of hip bone
1
ilium
1
ischium
1
pubis
1
+ See 1 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
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