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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
1
DNase-seq
Assay category
17
DNA binding
1
DNA accessibility
Target of assay
13
transcription factor
4
histone
4
histone modification
3
broad histone mark
2
RNA binding protein
1
narrow histone mark
Date released
14
November, 2017
2
August, 2017
2
October, 2019
Available data
419
bam
407
fastq
238
bigWig
188
tsv
184
bed narrowPeak
153
zippedFastqFolder
152
tagAlign
99
txt
43
bigBed narrowPeak
40
bed broadPeak
23
bedpe bed3+
21
hic
18
bigBed broadPeak
15
bed bed3+
15
bed bedMethyl
15
bigBed bedMethyl
10
bed bed3
7
bed bedgraph
4
hdf5
4
tar
3
cool
3
csv
2
ibed
1
bedpe
1
vcf
Organism
18
Homo sapiens
Biosample type
14
cell line
4
primary cell
Organ
14
liver
2
blood vessel
2
epithelium
2
vasculature
2
vein
Project
18
AMP
Genome assembly (visualization)
191
hg19
GRCh38
Lab
18
AMP-T2D consortium
Audit category:
2
inconsistent control read length
organ_slims!
kidney
month_released!
August, 2020
assembly!
GRCh38
BIOSAMPLE
ASSAY
18 results
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ChIP-seq
DNase-seq
cell line
HepG2
14
primary cell
endothelial cell of umbilical vein
2
skeletal muscle myoblast
1
1
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