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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
single cell RNA-seq
21
ChIP-seq
16
total RNA-seq
12
ATAC-seq
4
Capture-C
1
Hi-C
1
RNA microarray
1
STARR-seq
Assay category
114
Transcription
21
DNA binding
12
DNA accessibility
1
3D chromatin structure
Target of assay
14
histone
14
histone modification
7
broad histone mark
7
control
7
narrow histone mark
Date released
704
February, 2021
399
May, 2021
357
August, 2017
277
October, 2019
205
February, 2023
168
July, 2018
160
May, 2022
154
August, 2021
147
May, 2020
135
June, 2019
115
May, 2019
91
November, 2017
87
July, 2019
76
October, 2018
73
September, 2018
61
November, 2019
59
March, 2020
59
September, 2020
57
April, 2019
49
April, 2018
40
May, 2024
39
February, 2018
35
November, 2018
34
December, 2018
31
December, 2017
25
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
11
September, 2017
8
January, 2018
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
2
December, 2019
1
August, 2022
1
May, 2023
Available data
114
tsv
45
bam
30
bigWig
25
bed narrowPeak
20
tagAlign
2
bed bed3+
1
bedpe bed3+
Organism
153
Homo sapiens
Biosample type
101
tissue
42
in vitro differentiated cells
11
cell line
Organ
kidney
92
heart
liver
8
embryo
6
blood vessel
6
epithelium
6
vasculature
5
connective tissue
4
pancreas
2
artery
1
adipose tissue
Project
154
AMP
Genome assembly (visualization)
41
hg19
38
GRCh38
Lab
147
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
3
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
organ_slims!
kidney
liver
month_released!
August, 2020
BIOSAMPLE
ASSAY
154 results
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Clear Filters
single cell RNA-seq
ChIP-seq
total RNA-seq
ATAC-seq
Capture-C
Hi-C
RNA microarray
STARR-seq
tissue
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
aorta
4
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in vitro differentiated cells
neural progenitor cell
21
7
10
adipocyte
1
1
osteoblast
1
1
cell line
H1-hESC
8
EndoC_BH1
2
Synthesized DNA
1
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