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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
total RNA-seq
102
ChIP-seq
10
ATAC-seq
4
GRO-seq
1
DNase-seq
Assay category
120
Transcription
102
DNA binding
11
DNA accessibility
Target of assay
65
histone
65
histone modification
37
transcription factor
33
narrow histone mark
31
broad histone mark
6
RNA binding protein
3
chromatin remodeller
Date released
89
May, 2021
48
August, 2017
34
December, 2017
31
February, 2018
August, 2021
22
February, 2021
4
January, 2018
4
October, 2019
3
February, 2023
2
March, 2020
Available data
254
bam
237
bigWig
141
fastq
124
tsv
107
bed narrowPeak
23
bed bed3+
20
tagAlign
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
237
Homo sapiens
Biosample type
1681
tissue
582
primary cell
488
cell line
237
in vitro differentiated cells
3
stem cell
Organ
55
connective tissue
21
embryo
20
epithelium
14
liver
2
pancreas
1
heart
Project
237
AMP
Genome assembly (visualization)
233
hg19
223
GRCh38
4
hg18
Lab
229
AMP-T2D consortium
5
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
93
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
17
inconsistent control read length
organ_slims!
kidney
month_released!
August, 2021
BIOSAMPLE
ASSAY
237 results
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total RNA-seq
ChIP-seq
ATAC-seq
GRO-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
4
47
2
1
cardiac precursors (cardiac muscle cell)
19
pancreatic endoderm
4
12
1
hepatocyte
14
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