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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
41
WGBS
39
ATAC-seq
21
snATAC-seq
1
ChIP-seq
Assay category
60
DNA accessibility
52
Transcription
41
DNA methylation
1
DNA binding
Target of assay
1
histone
1
histone modification
1
narrow histone mark
Date released
134
May, 2022
19
September, 2020
1
October, 2019
Available data
3154
bam
2966
bigWig
1576
tsv
1562
bed narrowPeak
1264
fastq
888
bigBed narrowPeak
398
tagAlign
244
bed broadPeak
207
bigBed broadPeak
180
bed bed3+
153
zippedFastqFolder
99
txt
32
bed bedMethyl
32
bigBed bedMethyl
23
bedpe bed3+
22
hic
12
bed bed3
7
bed bedgraph
5
hdf5
4
tar
3
cool
3
csv
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
154
Homo sapiens
Biosample type
153
primary cell
1
tissue
Organ
80
epithelium
80
pancreas
1
brain
Project
153
HPAP
1
AMP
Genome assembly (visualization)
1
GRCh38
1
hg19
Lab
153
Klaus Kaestner, Upenn
1
AMP-T2D consortium
organ_slims!
kidney
month_released!
December, 2017
BIOSAMPLE
ASSAY
154 results
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single cell RNA-seq
WGBS
ATAC-seq
snATAC-seq
ChIP-seq
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
tissue
medial globus pallidus
1
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