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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
DNA binding
35
DNA accessibility
9
Transcription
6
3D chromatin structure
6
DNA methylation
Date released
33
June, 2019
10
July, 2019
5
March, 2020
4
August, 2017
2
February, 2020
2
May, 2022
1
January, 2018
Available data
41
bigWig
40
bam
34
bed bed3+
33
bed broadPeak
33
bed narrowPeak
33
bigBed broadPeak
33
bigBed narrowPeak
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
57
Homo sapiens
Biosample type
53
tissue
4
primary cell
Organ
728
pancreas
531
connective tissue
418
adipose tissue
395
epithelium
kidney
259
heart
239
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
57
AMP
Genome assembly (visualization)
46
hg19
40
GRCh38
Lab
57
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
organ_slims!
kidney
month_released!
December, 2017
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
57 results
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DNase-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
muscle of arm
17
muscle of leg
13
1
skeletal muscle tissue
1
4
1
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
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primary cell
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
1
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