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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1774
ChIP-seq
1329
total RNA-seq
412
ATAC-seq
296
single cell RNA-seq
128
DNase-seq
78
snATAC-seq
75
WGBS
24
pCHi-C
20
Hi-C
17
small RNA-seq
16
RRBS
5
GRO-seq
4
FAIRE-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
2
STARR-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
RNA microarray
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
16
DNA methylation
Date released
10
July, 2019
6
August, 2017
Available data
14
bed bedMethyl
14
bigBed bedMethyl
4
fastq
Organism
16
Homo sapiens
Biosample type
10
tissue
6
primary cell
Organ
5
epithelium
5
musculature of body
kidney
2
brain
2
liver
2
pancreas
1
eye
1
heart
1
pericardium
1
vasculature
Project
16
AMP
Genome assembly (visualization)
14
hg19
Lab
16
AMP-T2D consortium
Audit category:
inconsistent ontology term
organ_slims!
kidney
month_released!
March, 2020
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
16 results
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RRBS
tissue
skeletal muscle tissue
4
brain
1
heart left ventricle
1
islet of Langerhans
1
liver
1
+ See 2 more…
primary cell
cardiac muscle cell
1
choroid plexus epithelial cell
1
hepatocyte
1
retinal pigment epithelial cell
1
skeletal muscle cell
1
+ See 1 more…
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