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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
total RNA-seq
small RNA-seq
12
WGBS
11
RRBS
8
Hi-C
6
ATAC-seq
3
single cell RNA-seq
1
FAIRE-seq
Assay category
42
Transcription
23
DNA methylation
8
3D chromatin structure
7
DNA accessibility
Target of assay
3
control
Date released
707
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
284
October, 2019
205
February, 2023
200
May, 2022
189
August, 2021
168
July, 2018
137
June, 2019
115
May, 2019
94
December, 2017
88
November, 2018
80
July, 2019
76
October, 2018
73
September, 2018
62
March, 2020
61
November, 2019
59
September, 2020
57
April, 2019
49
April, 2018
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
7
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
1
May, 2023
Available data
61
bigWig
58
bam
42
tsv
19
bed bedMethyl
19
bigBed bedMethyl
6
bed narrowPeak
4
bed bed3+
4
hdf5
1
bigBed narrowPeak
Organism
80
Homo sapiens
Biosample type
58
tissue
22
primary cell
Organ
24
heart
15
connective tissue
14
brain
13
epithelium
12
vasculature
11
blood vessel
kidney
9
adipose tissue
8
musculature of body
7
liver
5
limb
4
pancreas
3
artery
2
pericardium
1
eye
Project
80
AMP
Genome assembly (visualization)
63
hg19
56
GRCh38
Lab
80
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
kidney
assay_title!
small RNA-seq
BIOSAMPLE
ASSAY
80 results
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total RNA-seq
WGBS
RRBS
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
4
1
2
gastrocnemius medialis
4
omental fat pad
4
subcutaneous adipose tissue
4
heart
2
1
+ See 23 more…
primary cell
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
+ See 16 more…
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