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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
total RNA-seq
17
small RNA-seq
12
WGBS
11
RRBS
8
Hi-C
3
single cell RNA-seq
1
ATAC-seq
Assay category
59
Transcription
23
DNA methylation
8
3D chromatin structure
1
DNA accessibility
Target of assay
3
control
Date released
684
February, 2021
314
May, 2020
269
August, 2017
266
May, 2021
168
July, 2018
162
May, 2022
147
August, 2021
140
February, 2023
111
October, 2019
93
November, 2017
91
July, 2019
59
March, 2020
59
September, 2020
49
April, 2018
31
October, 2018
27
September, 2018
25
February, 2020
24
November, 2019
23
February, 2018
22
December, 2017
22
May, 2019
19
April, 2020
16
January, 2021
15
November, 2018
14
November, 2020
11
October, 2017
10
April, 2019
9
January, 2019
8
January, 2018
7
August, 2020
7
December, 2019
7
June, 2019
6
September, 2017
5
December, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
1
May, 2023
Available data
78
bigWig
75
bam
59
tsv
19
bed bedMethyl
19
bigBed bedMethyl
bed narrowPeak
4
bed bed3+
4
hdf5
1
bigBed narrowPeak
Organism
91
Homo sapiens
Biosample type
67
tissue
24
primary cell
Organ
21
heart
18
connective tissue
17
brain
13
epithelium
12
adipose tissue
kidney
10
liver
10
musculature of body
10
vasculature
9
blood vessel
6
pancreas
5
limb
2
artery
2
pericardium
1
eye
Project
91
AMP
Genome assembly (visualization)
74
hg19
68
GRCh38
Lab
91
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
kidney
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
91 results
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total RNA-seq
small RNA-seq
WGBS
RRBS
Hi-C
single cell RNA-seq
ATAC-seq
tissue
heart left ventricle
2
4
1
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
+ See 23 more…
primary cell
cerebellar granule cell
2
mesenchymal stem cell of adipose
1
1
skeletal muscle satellite cell
1
1
Purkinje cell
1
astrocyte of the cerebellum
1
+ See 16 more…
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