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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
total RNA-seq
14
small RNA-seq
12
WGBS
11
RRBS
8
Hi-C
6
ATAC-seq
3
single cell RNA-seq
1
FAIRE-seq
Assay category
47
Transcription
23
DNA methylation
8
3D chromatin structure
7
DNA accessibility
Target of assay
3
control
Date released
406
November, 2017
399
May, 2021
354
August, 2017
341
May, 2020
321
February, 2021
283
October, 2019
204
February, 2023
200
May, 2022
188
August, 2021
168
July, 2018
136
June, 2019
115
May, 2019
94
December, 2017
87
November, 2018
85
July, 2019
73
September, 2018
61
March, 2020
60
November, 2019
59
September, 2020
57
April, 2019
53
October, 2018
49
April, 2018
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
11
September, 2017
7
August, 2020
7
December, 2019
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
66
bigWig
63
bam
47
tsv
19
bed bedMethyl
19
bigBed bedMethyl
6
bed narrowPeak
4
bed bed3+
4
hdf5
1
bigBed narrowPeak
Organism
85
Homo sapiens
Biosample type
63
tissue
22
primary cell
Organ
25
heart
18
brain
18
connective tissue
13
epithelium
adipose tissue
12
vasculature
11
blood vessel
kidney
10
liver
10
musculature of body
6
pancreas
5
limb
3
artery
2
pericardium
1
eye
Project
85
AMP
Genome assembly (visualization)
68
hg19
61
GRCh38
Lab
85
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
kidney
adipose tissue
BIOSAMPLE
ASSAY
85 results
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total RNA-seq
small RNA-seq
WGBS
RRBS
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
4
1
2
right lobe of liver
2
2
1
body of pancreas
2
2
gastrocnemius medialis
4
heart
2
1
1
+ See 22 more…
primary cell
cerebellar granule cell
2
skeletal muscle satellite cell
1
1
Purkinje cell
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
+ See 15 more…
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