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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
total RNA-seq
16
small RNA-seq
9
RRBS
8
Hi-C
4
WGBS
3
single cell RNA-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
48
Transcription
13
DNA methylation
8
3D chromatin structure
3
DNA accessibility
Target of assay
3
control
Date released
641
February, 2021
411
August, 2017
406
November, 2017
396
May, 2021
341
May, 2020
276
October, 2019
200
May, 2022
169
February, 2023
168
July, 2018
102
June, 2019
97
August, 2021
94
December, 2017
94
May, 2019
88
November, 2018
76
October, 2018
73
September, 2018
72
July, 2019
61
November, 2019
59
September, 2020
55
March, 2020
49
April, 2018
39
February, 2018
35
December, 2018
30
January, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
7
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
1
May, 2023
Available data
57
bigWig
54
bam
48
tsv
11
bed bedMethyl
11
bigBed bedMethyl
4
bed bed3+
4
hdf5
2
bed narrowPeak
1
bigBed narrowPeak
Organism
72
Homo sapiens
Biosample type
53
tissue
19
primary cell
Organ
heart
18
brain
18
connective tissue
13
epithelium
12
adipose tissue
12
vasculature
11
blood vessel
kidney
10
liver
10
musculature of body
6
pancreas
5
limb
3
artery
2
pericardium
1
eye
Project
72
AMP
Genome assembly (visualization)
63
hg19
52
GRCh38
Lab
72
AMP-T2D consortium
organ_slims!
kidney
heart
BIOSAMPLE
ASSAY
72 results
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total RNA-seq
small RNA-seq
RRBS
Hi-C
WGBS
single cell RNA-seq
ATAC-seq
FAIRE-seq
tissue
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
gastrocnemius medialis
4
+ See 18 more…
primary cell
cerebellar granule cell
2
mesenchymal stem cell of adipose
1
1
skeletal muscle satellite cell
1
1
Purkinje cell
1
astrocyte of the cerebellum
1
+ See 11 more…
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