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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
total RNA-seq
17
small RNA-seq
11
RRBS
11
WGBS
6
ATAC-seq
4
Hi-C
3
single cell RNA-seq
1
FAIRE-seq
Assay category
59
Transcription
22
DNA methylation
7
DNA accessibility
4
3D chromatin structure
Target of assay
3
control
Date released
701
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
215
October, 2019
205
February, 2023
200
May, 2022
189
August, 2021
168
July, 2018
108
May, 2019
105
June, 2019
94
December, 2017
92
July, 2019
88
November, 2018
76
October, 2018
73
September, 2018
62
March, 2020
61
November, 2019
59
September, 2020
57
April, 2019
49
April, 2018
39
February, 2018
35
December, 2018
30
January, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
7
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
1
May, 2023
Available data
77
bigWig
74
bam
59
tsv
18
bed bedMethyl
18
bigBed bedMethyl
6
bed narrowPeak
4
bed bed3+
4
hdf5
1
bigBed narrowPeak
Organism
92
Homo sapiens
Biosample type
68
tissue
24
primary cell
Organ
25
heart
18
brain
18
connective tissue
13
epithelium
12
adipose tissue
12
vasculature
11
blood vessel
kidney
10
liver
10
musculature of body
6
pancreas
limb
3
artery
2
pericardium
1
eye
Project
92
AMP
Genome assembly (visualization)
80
hg19
72
GRCh38
Lab
92
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
kidney
limb
BIOSAMPLE
ASSAY
92 results
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total RNA-seq
small RNA-seq
RRBS
WGBS
ATAC-seq
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
1
4
2
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
+ See 22 more…
primary cell
cerebellar granule cell
2
mesenchymal stem cell of adipose
1
1
skeletal muscle satellite cell
1
1
Purkinje cell
1
astrocyte of the cerebellum
1
+ See 16 more…
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