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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
total RNA-seq
14
small RNA-seq
11
WGBS
10
RRBS
7
Hi-C
6
ATAC-seq
3
single cell RNA-seq
1
FAIRE-seq
Assay category
52
Transcription
21
DNA methylation
7
3D chromatin structure
7
DNA accessibility
Target of assay
3
control
Date released
704
February, 2021
399
May, 2021
357
August, 2017
277
October, 2019
205
February, 2023
168
July, 2018
160
May, 2022
154
August, 2021
147
May, 2020
135
June, 2019
115
May, 2019
91
November, 2017
87
July, 2019
76
October, 2018
73
September, 2018
61
November, 2019
59
March, 2020
59
September, 2020
57
April, 2019
49
April, 2018
39
February, 2018
35
November, 2018
34
December, 2018
31
December, 2017
25
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
2
December, 2019
1
August, 2022
1
May, 2023
Available data
70
bigWig
68
bam
52
tsv
18
bed bedMethyl
18
bigBed bedMethyl
6
bed narrowPeak
3
bed bed3+
3
hdf5
1
bigBed narrowPeak
Organism
87
Homo sapiens
Biosample type
65
tissue
22
primary cell
Organ
25
heart
18
brain
18
connective tissue
13
epithelium
12
adipose tissue
12
vasculature
11
blood vessel
kidney
liver
10
musculature of body
6
pancreas
5
limb
3
artery
2
pericardium
1
eye
Project
87
AMP
Genome assembly (visualization)
71
hg19
66
GRCh38
Lab
87
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
kidney
liver
BIOSAMPLE
ASSAY
87 results
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total RNA-seq
small RNA-seq
WGBS
RRBS
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
4
1
2
omental fat pad
4
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
gastrocnemius medialis
4
+ See 22 more…
primary cell
cerebellar granule cell
2
mesenchymal stem cell of adipose
1
1
skeletal muscle satellite cell
1
1
Purkinje cell
1
astrocyte of the cerebellum
1
+ See 14 more…
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