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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
total RNA-seq
15
small RNA-seq
12
WGBS
9
RRBS
8
Hi-C
6
ATAC-seq
3
single cell RNA-seq
1
FAIRE-seq
Assay category
55
Transcription
21
DNA methylation
8
3D chromatin structure
7
DNA accessibility
Target of assay
3
control
Date released
675
February, 2021
406
November, 2017
341
May, 2020
338
May, 2021
266
October, 2019
223
August, 2017
185
August, 2021
149
February, 2023
133
June, 2019
113
May, 2019
96
May, 2022
94
December, 2017
91
July, 2019
81
November, 2018
57
April, 2019
48
March, 2020
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2018
19
April, 2020
18
October, 2017
11
July, 2018
10
April, 2018
8
January, 2018
8
January, 2021
7
December, 2019
6
November, 2019
6
November, 2020
5
March, 2023
2
June, 2018
1
August, 2018
1
May, 2023
1
October, 2022
1
September, 2018
Available data
74
bigWig
71
bam
55
tsv
17
bed bedMethyl
17
bigBed bedMethyl
6
bed narrowPeak
4
bed bed3+
4
hdf5
1
bigBed narrowPeak
Organism
91
Homo sapiens
Biosample type
67
tissue
24
primary cell
Organ
25
heart
18
brain
18
connective tissue
13
epithelium
12
adipose tissue
12
vasculature
11
blood vessel
kidney
10
liver
10
musculature of body
pancreas
5
limb
3
artery
2
pericardium
1
eye
Project
91
AMP
Genome assembly (visualization)
74
hg19
69
GRCh38
Lab
91
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
kidney
pancreas
BIOSAMPLE
ASSAY
91 results
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total RNA-seq
small RNA-seq
WGBS
RRBS
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
4
1
2
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
gastrocnemius medialis
4
+ See 21 more…
primary cell
cerebellar granule cell
2
mesenchymal stem cell of adipose
1
1
skeletal muscle satellite cell
1
1
Purkinje cell
1
astrocyte of the cerebellum
1
+ See 16 more…
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