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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
165
ChIP-seq
100
ATAC-seq
1
pCHi-C
Assay category
190
Transcription
165
DNA binding
100
DNA accessibility
Target of assay
116
histone
116
histone modification
60
narrow histone mark
56
broad histone mark
45
control
4
RNA binding protein
4
transcription factor
Date released
707
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
284
October, 2019
205
February, 2023
200
May, 2022
189
August, 2021
168
July, 2018
137
June, 2019
115
May, 2019
97
July, 2019
94
December, 2017
88
November, 2018
76
October, 2018
73
September, 2018
62
March, 2020
61
November, 2019
59
September, 2020
57
April, 2019
49
April, 2018
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
7
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
1
May, 2023
Available data
398
bam
353
bigWig
189
tsv
120
bed narrowPeak
93
bigBed narrowPeak
50
tagAlign
Organism
456
Homo sapiens
Biosample type
308
tissue
147
primary cell
1
cell line
Organ
194
liver
50
blood vessel
50
vasculature
28
brain
21
heart
7
limb
7
musculature of body
5
artery
5
epithelium
kidney
2
pancreas
Project
411
AMP
45
T1D
Genome assembly (visualization)
353
hg19
299
GRCh38
Lab
411
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
organ_slims!
kidney
BIOSAMPLE
ASSAY
456 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
tissue
liver
143
50
ascending aorta
16
thoracic aorta
16
temporal lobe
15
angular gyrus
13
+ See 7 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 24 more…
cell line
HepG2
1
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