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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
105
ATAC-seq
27
ChIP-seq
1
pCHi-C
Assay category
190
Transcription
105
DNA accessibility
27
DNA binding
Target of assay
control
27
histone
27
histone modification
27
narrow histone mark
Date released
704
February, 2021
390
May, 2021
361
August, 2017
335
November, 2017
318
May, 2020
251
October, 2019
205
February, 2023
200
May, 2022
177
August, 2021
168
July, 2018
130
June, 2019
94
July, 2019
93
May, 2019
82
November, 2018
73
December, 2017
73
September, 2018
62
March, 2020
59
November, 2019
59
September, 2020
49
April, 2018
47
April, 2019
47
October, 2018
40
May, 2024
31
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
20
October, 2017
19
April, 2020
16
January, 2021
11
November, 2020
8
January, 2018
7
August, 2020
7
December, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
1
May, 2023
Available data
265
bam
265
bigWig
189
tsv
32
bed narrowPeak
27
tagAlign
5
bigBed narrowPeak
5
fastq
Organism
323
Homo sapiens
Biosample type
170
tissue
152
primary cell
1
cell line
Organ
171
liver
5
epithelium
5
pancreas
Project
278
AMP
45
T1D
Genome assembly (visualization)
265
hg19
212
GRCh38
Lab
278
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
organ_slims!
kidney
target.investigated_as!
control
BIOSAMPLE
ASSAY
323 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
tissue
liver
143
27
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 27 more…
cell line
HepG2
1
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