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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
ChIP-seq
Assay category
38
DNA binding
Target of assay
29
histone
29
histone modification
24
transcription factor
narrow histone mark
14
broad histone mark
13
chromatin remodeller
6
RNA binding protein
1
recombinant protein
Date released
16
November, 2017
9
August, 2017
7
December, 2017
5
November, 2018
1
February, 2018
Available data
38
bam
38
bigWig
38
fastq
37
bed narrowPeak
23
bigBed narrowPeak
8
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
6
tagAlign
Organism
38
Homo sapiens
Biosample type
21
cell line
13
in vitro differentiated cells
3
tissue
1
stem cell
Organ
21
liver
6
connective tissue
3
pancreas
embryo
Project
38
AMP
Genome assembly (visualization)
38
hg19
35
GRCh38
Lab
38
AMP-T2D consortium
Audit category:
5
missing controlled_by
Audit category:
38
inconsistent control read length
8
inconsistent control run_type
3
inconsistent assembly
organ_slims!
kidney
embryo
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
38 results
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ChIP-seq
cell line
HepG2
21
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
3
Posterior foregut
2
primitive gut cell
2
tissue
pancreas
3
stem cell
hESC
1
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