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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1685
ChIP-seq
1401
total RNA-seq
409
ATAC-seq
206
single cell RNA-seq
101
DNase-seq
85
RNA microarray
78
snATAC-seq
67
WGBS
52
pCHi-C
30
Hi-C
16
small RNA-seq
15
RRBS
10
MeRIP-seq
5
GRO-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
206
Transcription
Target of assay
3
control
Date released
48
July, 2018
43
April, 2018
40
September, 2020
34
May, 2022
13
February, 2021
9
April, 2020
6
August, 2021
3
August, 2018
3
July, 2019
3
June, 2018
2
December, 2019
1
November, 2018
1
September, 2018
Available data
128
fastq
108
tsv
100
bam
100
bigWig
52
zippedFastqFolder
3
csv
Organism
206
Homo sapiens
Biosample type
187
primary cell
17
tissue
2
in vitro differentiated cells
Organ
heart
74
pancreas
70
epithelium
kidney
9
lung
6
blood vessel
6
vasculature
4
connective tissue
3
brain
2
artery
1
liver
1
musculature of body
Project
112
AMP
85
HPAP
9
LungMap
Genome assembly (visualization)
100
GRCh38
100
hg19
Lab
112
AMP-T2D consortium
85
Klaus Kaestner, Upenn
9
Xin Sun, UCSD
Audit category:
9
inconsistent ontology term
2
audit script error
organ_slims!
kidney
heart
BIOSAMPLE
ASSAY
206 results
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single cell RNA-seq
primary cell
Langerhans cell
85
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
+ See 14 more…
tissue
lung
9
aorta
4
pulmonary artery
2
liver
1
skeletal muscle tissue
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
See all biosamples
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