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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
260
ChIP-seq
236
total RNA-seq
199
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
17
DNase-seq
17
pCHi-C
9
Hi-C
6
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
425
Transcription
273
DNA accessibility
260
DNA binding
54
DNA methylation
9
3D chromatin structure
Target of assay
224
histone
224
histone modification
116
broad histone mark
108
narrow histone mark
31
control
8
RNA binding protein
8
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
40
June, 2019
22
July, 2019
22
October, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
574
bigWig
566
bam
409
fastq
267
bed narrowPeak
259
tsv
153
zippedFastqFolder
96
tagAlign
91
bigBed narrowPeak
37
bed broadPeak
37
bigBed broadPeak
21
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
1
bed bed3
1
tar
Organism
1038
Homo sapiens
Biosample type
2077
tissue
1038
primary cell
379
in vitro differentiated cells
242
cell line
10
stem cell
Organ
406
epithelium
346
pancreas
39
connective tissue
37
vasculature
kidney
31
blood vessel
22
vein
21
brain
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
509
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
590
hg19
497
GRCh38
Lab
474
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
45
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
kidney
liver
BIOSAMPLE
ASSAY
1038 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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