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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
10
total RNA-seq
3
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
10
Transcription
4
DNA accessibility
Date released
84
February, 2021
7
February, 2023
7
May, 2022
1
October, 2022
Available data
3206
bam
2967
bigWig
1571
tsv
1567
bed narrowPeak
1358
fastq
912
bigBed narrowPeak
398
tagAlign
242
bed broadPeak
205
bigBed broadPeak
193
bed bed3+
153
zippedFastqFolder
99
txt
32
bed bedMethyl
32
bigBed bedMethyl
23
bedpe bed3+
22
hic
12
bed bed3
7
bed bedgraph
5
hdf5
4
tar
3
cool
3
csv
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
98
Homo sapiens
Biosample type
95
tissue
3
in vitro differentiated cells
1
cell line
Organ
88
bone element
kidney
6
pancreas
4
skeleton
1
musculature of body
Project
99
AMP
Genome assembly (visualization)
4
hg19
Lab
90
AMP-T2D consortium
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
1
audit script error
organ_slims!
kidney
nerve
BIOSAMPLE
ASSAY
99 results
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RNA microarray
total RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
bone element
84
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
ischium
1
+ See 2 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
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